KidsUrologyCare.com Dr. Parviz Hajiyev

Urine test and culture in children: collecting the sample correctly

Collecting a urine sample from a child correctly: midstream, clean catch, drawbacks of urine bags and how soon to deliver the sample.

Quick answers

Most reliable sample
Midstream urine after cleaning.
Urine bag
Only a negative result is reliable.
Delivery time
Within 1–2 hours; if delayed, in the refrigerator.
Before antibiotics
Yes, the sample must be collected before starting antibiotics.

Why does the collection method matter?

Urine is sterile in the kidney, but on its way out it can be contaminated by bacteria on the skin and genitals. In a sample that is not collected correctly, bacteria are “found” and the child gets unnecessary antibiotics, or the opposite happens and a real infection is missed.

In children who use the toilet

  1. Hands are washed.
  2. The genitals are washed with water; soap and antiseptic are not needed. In girls, front to back; in boys, with the foreskin gently pulled back.
  3. The child starts to pass urine, and the first part goes into the toilet.
  4. The middle part is collected in a sterile container.
  5. The rest goes into the toilet again.

In babies

  • “Clean catch” method: 30–60 minutes after a feed, the diaper is opened, the genitals are washed and a sterile container is held ready. Lightly tapping the baby’s lower belly and lower back stimulates passing urine.
  • Catheter sample: in urgent cases and in small babies, by a health care worker.
  • Urine bag: a bag stuck to the skin. It is easy, but the sample gets contaminated quickly. A negative result almost rules out infection, while a positive result must be repeated using a correct method.

Delivering the sample

  • The sample should reach the laboratory within 1–2 hours.
  • If delayed, it can be kept in the refrigerator (4°C) for up to 24 hours.
  • Write the child’s name, the date and the time on the container.

Before antibiotics

When a urinary tract infection is suspected, the sample must be collected before starting antibiotics. Even a single dose of antibiotic can make the culture result falsely negative.

Note for pediatricians and family doctors

A positive culture from a bag-collected sample is unreliable for diagnosis because of its high false-positive rate; a positive screening result should be confirmed with a midstream, catheter or suprapubic aspiration sample. In infants, stimulation methods such as Quick-Wee are useful for a 'clean catch'. Thresholds for significant bacteriuria on culture depend on the collection method.

What happens at the visit?

  1. When needed, the sample is collected at the clinic using the correct method.
  2. Urinalysis and culture results are assessed together with the symptoms.
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Frequently asked questions

The test shows white blood cells. Is this an infection?

Not always. White blood cells are a sign of inflammation, but in girls they can also come from outside contamination, fever or other causes. The diagnosis is made from the symptoms and the culture of a correctly collected sample.

When will the culture result be ready?

Usually in 2–3 days. That is why, in a child with fever, antibiotics are started without waiting for the culture result and are adjusted later based on the result.

Related topics

Sources

  • EAU Guidelines on Paediatric Urology, 2025: Urinary tract infections.
  • Kaufman J et al. Faster clean catch urine collection (Quick-Wee method) from infants: randomised controlled trial. BMJ, 2017.

This page is for education. Decisions about your child’s treatment are made together with the doctor after an examination.

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